Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015803187.1_cds_XP_016483221.1_7425
CDS Infomation

[gene=LOC107803939] [db_xref=GeneID:107803939] [protein=histidine--tRNA ligase, cytoplasmic-like] [partial=3'] [protein_id=XP_016483221.1] [location=join(40079..41362,42641..42820,43033..>43125)] [gbkey=CDS]
Sequence

ATGGCAGAAGAGAGACGCGTGGTTACTGTGGGTGGAAAAGGCTCATCACTGTCATCCTCC
TCCGTCTTCGAAATTGCCAACGGACTCAGTCGCCTGAGCATTGACACTTCAGCACTCTCC
AAAGTATCATCCTCCTCAAATAACAACACTAATGCTCCTACACAATCTTCCGCATTTTCA
GTACTCGGTAATTTAACACCCGAGGAGTCTAAAGCTTCTCTTGTAGTTCTCCTTAACAAG
CTCTTGCTCTCTTCTTCGTCTTCCGCTGCCGTCACTCAGCTCTTTGATATCATCCTCAAT
GACGTGTCCTCCATTTCGTTTGATAGTACTATTGACGGCGTTTCTCCAGGCGATTTTTCT
GTAGCAGCAATATCTGGAATCTCCGCTATATTGGATCATAGAAGTTCAGCTTTGTCTGTT
ATTATTGACGCCGTTGCTGCCTTGTCCTGCGAGGCCTTGGGTGCGGACATTTCAGCTTTC
AACTTGAATGATTCCGGTGATGGTTCCACTGCCAAGGACGTCGTTTCCGTGGCTACTGAC
GTCAAGATCTTACTTAATGGTTCTAAATTCGTGAACAAAAATAGTGATGAAGTTGCAGTT
TCTAGTGTTCCAGTTGTGCACGGCAAGTTTAGAGAAATTTGCCGGCTCCTGCACTCCAGC
ACACGTGTGCAACTGAACTCTGCTGTTGTATCCAATTCAGGATCTTCTGGAACAGCTAGT
GCAATATGCACCACGTTGTTTTCTTTGGCCGTGGCACTTAAAGATTTGGGCAACATCAGT
TATAACCGAGCGAAGCGCACCAGAGATGATGGAATTTCTGCAATGCTGCAAAAAGAATGT
CCTCGACCTGATCAGCTGAAAGCTGTTTTTGCGTCTTTGGTTTCAGCTCACTCGGATGAG
GAATATGTTAAGTTTTCACATGATGTTAACTCCTTACTGGTAATGGTAGAGAAAATAGTT
TCATGGGAGGCCTTAGCTGCTTTCTTTTCGCTCGAAGAAAAAGACTTTATCAGTGGTAAT
ACGAGTGTATGCGAGGACAGTGCAAAAGCAGGTAAAAAAGGAGGCAAGAAGAAGAAGATT
CTTGGTAAAGGTACCACTGCTCTGCTGCAATTTTTGAAGGATAGGCTGCTGAGCATGCAT
ATTCAGACTGAGGCATTCGAGAATTTGGTTCGCCATTTCTTGTCTCTGTTGGACCCGAAG
GACTCGGGATTTGGCACATTATTGAGAAAGGTGAAAGATATTGTGGAGAGCAATGAGAGC
CGGCGGTTGCCTAAACTCCCAAAGGGTACGCGTGATTTTGCAAAAGAACAGATGGCTATA
AGAGAGAAAGCATTCTCAATTATAGTTGAGGTTTTCAAAAGGCATGGTGCTTCAGCTTTG
GATACTCCCGCTTTTGAAATGAGAGAGACACTGATGGGAAAATACGGGGAAGACTCAAAA
TTAATCTATGACCTTGCTGATCAGGGGGGAGAACTTTGCTCTCTTCGTTATGACCTGACA
GTTCCGTTTGCTAGATACGTAGCAATGAATGGTCTGACATCCTTCAAGCGTTATCAG

Peptide Sequence

PEP ID

XP_016483221.1
PEP Infomation

PREDICTED: histidine--tRNA ligase, cytoplasmic-like, partial [Nicotiana tabacum]
Sequence

MAEERRVVTVGGKGSSLSSSSVFEIANGLSRLSIDTSALSKVSSSSNNNTNAPTQSSAFS
VLGNLTPEESKASLVVLLNKLLLSSSSSAAVTQLFDIILNDVSSISFDSTIDGVSPGDFS
VAAISGISAILDHRSSALSVIIDAVAALSCEALGADISAFNLNDSGDGSTAKDVVSVATD
VKILLNGSKFVNKNSDEVAVSSVPVVHGKFREICRLLHSSTRVQLNSAVVSNSGSSGTAS
AICTTLFSLAVALKDLGNISYNRAKRTRDDGISAMLQKECPRPDQLKAVFASLVSAHSDE
EYVKFSHDVNSLLVMVEKIVSWEALAAFFSLEEKDFISGNTSVCEDSAKAGKKGGKKKKI
LGKGTTALLQFLKDRLLSMHIQTEAFENLVRHFLSLLDPKDSGFGTLLRKVKDIVESNES
RRLPKLPKGTRDFAKEQMAIREKAFSIIVEVFKRHGASALDTPAFEMRETLMGKYGEDSK
LIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRYQ

Transcript Sequence

Gene sequence data has not been registered.